work/3574155021_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155021_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155021_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155021_sv1	30747668	52488	0.001707	25244053	0.178993	12591686	0.783116	0.214805	0.868444	0.131556	184	271	399	12364422	0.981951	10737811	1626611	19769008	5422557	298.9816	104.315414	5503615	0.980035	0.949296	0.949296	4604277000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	203210	0.081633	0.0	0.101783	0.099041	0.189335	0.335612	0.811229	1.152732	0.97556	0.898272	1.0089	1.027115	1.007481	1.179188	1.154106	1.058035	0.720079	0.351775	0.378198	0.0	0.0	0.0	268.964429	0.345684	1194.0	65.0	101.0	266.0	464.0	534.0	0.04809	0.998999	6364883	6060301	1.00	0.95191	6366463	0.0132	654	-2139.7905	271.1139	6388832

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