work/3574155024_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155024_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155024_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155024_sv1	34308410	56274	0.00164	27936981	0.18571	13936445	0.787348	0.210638	0.869595	0.130405	172	257	391	13665122	0.980531	11883121	1782001	21996122	5884585	290.21624	108.524124	6371429	0.978541	0.945289	0.945289	5137820400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	212823	0.189709	0.0	0.168781	0.21501	0.23794	0.355965	0.808414	1.140473	0.98619	0.896738	1.006975	1.016498	1.003909	1.191322	1.160518	1.101692	0.73072	0.344322	0.367589	0.0	0.0	0.0	291.425248	0.304951	1568.0	88.0	127.0	286.0	490.0	571.0	0.016718	0.998062	6345492	6260026	1.00	0.983282	6366463	0.0082	679	-1839.5539	128.2918	6388832

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