work/3574155027_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155027_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155027_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155027_sv1	35551816	53698	0.00151	29155085	0.179927	14546385	0.778577	0.219582	0.871063	0.128937	190	282	418	14267495	0.980828	12427880	1839615	22699466	6401921	310.851556	109.182571	6396731	0.979613	0.947711	0.947711	5324717700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	231750	0.079074	0.0	0.104985	0.110793	0.197038	0.335957	0.830958	1.178021	0.988821	0.903385	1.013501	1.017931	0.985926	1.14211	1.094093	1.00314	0.677887	0.339653	0.385987	0.0	0.0	0.0	311.197382	0.340846	1686.0	76.0	118.0	310.0	526.0	596.0	0.029431	0.998537	6365224	6179093	1.00	0.970569	6366463	0.0157	635	-2685.0796	405.8667	6388832

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