work/3574155030_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155030_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155030_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155030_sv1	32166416	48919	0.001521	24926903	0.225064	12434813	0.747195	0.250843	0.867468	0.132532	209	321	486	12049200	0.968989	10452298	1596902	18625254	6252730	353.541654	130.009354	7239513	0.977717	0.941439	0.941439	4817624550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	186197	0.13219	0.0	0.165606	0.201101	0.27057	0.365423	0.854498	1.184858	1.01186	0.9026	1.004481	1.009998	0.978527	1.116342	1.049082	0.923258	0.634045	0.33388	0.314505	0.0	0.0	0.0	258.316924	0.31356	1344.0	72.0	104.0	261.0	423.0	482.0	0.041723	0.999477	6345806	6100837	1.00	0.958277	6366463	0.0072	724	-1624.0106	111.2075	6388832

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