work/3574155031_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155031_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155031_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155031_sv1	34991284	63772	0.001823	28768769	0.17783	14348181	0.782421	0.215363	0.868592	0.131408	182	272	405	14098219	0.982579	12245601	1852618	22509279	6195718	301.032181	108.225502	6222515	0.979894	0.948521	0.948521	5239126800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	233014	0.081313	0.0	0.086282	0.102301	0.184404	0.330776	0.802706	1.141845	0.965889	0.894151	1.010977	1.032234	1.016666	1.200523	1.177416	1.085681	0.739248	0.374427	0.442704	0.0	0.0	0.0	304.097628	0.347021	1378.0	73.0	113.0	301.0	528.0	608.0	0.033888	0.998262	6365336	6150719	1.00	0.966112	6366463	0.0125	655	-2355.4865	278.048	6388832

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