work/3574155034_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155034_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155034_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155034_sv1	32117992	48744	0.001518	25452333	0.207537	12697618	0.76662	0.231465	0.86665	0.13335	185	287	444	12392370	0.97596	10739843	1652527	19512258	5891331	322.183742	122.743118	6665659	0.978709	0.945091	0.945091	4810387200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	202364	0.084353	0.0	0.101125	0.114748	0.209122	0.338747	0.818721	1.16398	0.9875	0.908253	1.016539	1.028853	0.998473	1.143042	1.085081	0.964484	0.650129	0.332481	0.353199	0.0	0.0	0.0	265.309119	0.346157	1436.0	63.0	98.0	263.0	456.0	519.0	0.051576	0.999139	6365318	6038106	1.00	0.948424	6366463	0.0043	692	-1235.9212	51.0921	6388832

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