work/3574155038_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155038_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155038_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155038_sv1	18368172	30062	0.001637	14269498	0.22314	7115684	0.709352	0.288541	0.868943	0.131057	225	371	571	6654593	0.935201	5782459	872134	10122097	4117339	402.578214	155.28743	4098674	0.968368	0.91482	0.91482	2750716500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	110009	0.065717	0.0	0.10315	0.11262	0.289544	0.307302	0.733954	1.062828	0.94015	0.910891	1.050218	1.130112	1.098681	1.182793	1.093613	0.824488	0.608395	0.262629	0.449202	0.0	0.0	0.0	141.36465	0.375038	1019.0	29.0	47.0	138.0	254.0	294.0	0.303513	0.999954	6294356	4434156	0.99	0.696487	6366463	0.004	628	-632.5162	21.6701	6388832

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