work/3574155054_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155054_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155054_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155054_sv1	28018568	39415	0.001407	21277445	0.240595	10614908	0.737844	0.260304	0.868373	0.131627	220	336	508	10232104	0.963937	8885281	1346823	15699432	5538598	369.464603	134.365631	6741123	0.976369	0.937447	0.937447	4196872950	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	152803	0.173269	0.0	0.176655	0.271256	0.301722	0.36774	0.844509	1.177848	1.02235	0.893729	1.005393	1.005334	0.978357	1.133737	1.050155	0.929678	0.625804	0.292839	0.367984	0.0	0.0	0.0	219.702273	0.338079	1223.0	56.0	83.0	215.0	379.0	472.0	0.089704	0.999605	6344624	5795366	1.00	0.910296	6366463	0.0013	616	-604.2018	3.6915	6388832

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