work/3574155058_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155058_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155058_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155058_sv1	37313358	63660	0.001706	28799825	0.228163	14363884	0.777561	0.220229	0.872745	0.127255	174	274	427	14040978	0.97752	12254193	1786785	22393613	6342552	308.341306	120.438019	8513533	0.978301	0.945223	0.945223	5587454700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	232286	0.074818	0.0	0.086654	0.109252	0.197439	0.344118	0.821609	1.140954	0.959761	0.888853	1.008822	1.042267	1.027005	1.196528	1.155787	1.042824	0.714054	0.365215	0.383814	0.0	0.0	0.0	297.612468	0.341365	2086.0	73.0	113.0	294.0	514.0	593.0	0.033354	0.998779	6365439	6154117	1.00	0.966646	6366463	0.0028	658	-1150.3765	26.1062	6388832

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