work/3574155060_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155060_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155060_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155060_sv1	42586606	65167	0.00153	33705820	0.208535	16815798	0.773537	0.22453	0.872146	0.127854	194	289	430	16451232	0.97832	14347884	2103348	26072685	7567968	319.070845	112.751167	8880786	0.979393	0.94679	0.94679	6378215850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	256869	0.129148	0.0	0.129892	0.189871	0.240679	0.363471	0.864572	1.192377	1.009266	0.898643	1.000375	0.996845	0.967172	1.127347	1.081258	0.997819	0.669096	0.328267	0.348365	0.0	0.0	0.0	358.624249	0.301224	2406.0	107.0	152.0	363.0	580.0	657.0	0.007593	0.996593	6345719	6318124	1.00	0.992407	6366463	0.0098	688	-2621.724	245.4314	6388832

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