work/3579426050_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426050_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426050_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426050_sv1	33275050	50210	0.001509	26936273	0.190496	13438555	0.747973	0.250163	0.875358	0.124642	223	333	495	12970938	0.965203	11354212	1616726	20147597	6738466	364.283795	127.438889	6338777	0.976868	0.938807	0.938807	4983726000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	211054	0.080964	0.0	0.108736	0.11978	0.247416	0.335949	0.812198	1.151249	0.976555	0.905123	1.020962	1.048287	1.020236	1.150173	1.073937	0.901684	0.6245	0.314709	0.378457	0.0	0.0	0.0	285.030426	0.362071	1570.0	63.0	100.0	281.0	496.0	568.0	0.049909	0.998356	6364524	6048722	1.00	0.950091	6366463	0.0059	683	-1496.884	88.2754	6388832

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