work/3579426053_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426053_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426053_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426053_sv1	27443952	34044	0.00124	21831460	0.204507	10895203	0.74488	0.25356	0.881005	0.118995	227	349	521	10519130	0.965483	9267406	1251724	16261827	5535589	379.35963	135.960175	5612492	0.976996	0.938281	0.938281	4111486200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	160027	0.158629	0.0	0.139663	0.198242	0.277773	0.361049	0.852224	1.192001	1.017626	0.910779	1.009243	1.016377	0.972445	1.098044	1.007502	0.846273	0.568493	0.274727	0.312661	0.0	0.0	0.0	229.736328	0.322973	1283.0	60.0	88.0	232.0	378.0	430.0	0.076442	0.999376	6344374	5879795	1.00	0.923558	6366463	0.0044	546	-823.0703	35.9537	6388832

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