work/3579426054_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426054_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426054_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426054_sv1	32378622	42443	0.001311	24645370	0.238838	12297742	0.734299	0.263979	0.884481	0.115519	250	369	539	11779623	0.957869	10418848	1360775	18097069	6505858	398.871428	133.708038	7733252	0.976276	0.935809	0.935809	4850426850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	180939	0.162236	0.0	0.150165	0.204726	0.300889	0.360397	0.858994	1.191773	1.017459	0.905341	1.011458	1.017315	0.980412	1.093415	1.001203	0.814956	0.560166	0.246251	0.365031	0.0	0.0	0.0	260.521977	0.329551	1277.0	66.0	96.0	264.0	430.0	488.0	0.057023	0.999101	6345803	6003426	1.00	0.942977	6366463	0.013	637	-2104.4153	255.0069	6388832

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