work/3579426056_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426056_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426056_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426056_sv1	30636390	48143	0.001571	24488403	0.200676	12215502	0.73853	0.259504	0.878247	0.121753	244	352	512	11737051	0.960832	10308026	1429025	18085427	6354833	382.304858	126.203049	6147987	0.97616	0.936586	0.936586	4588237050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	180847	0.172941	0.0	0.194749	0.215816	0.296217	0.363991	0.853166	1.182602	1.011225	0.906167	1.012072	1.019446	0.981526	1.100848	1.030337	0.86886	0.603987	0.299659	0.399642	0.0	0.0	0.0	260.206261	0.328865	1895.0	67.0	97.0	263.0	432.0	491.0	0.055048	0.999517	6345336	6016004	1.00	0.944952	6366463	0.0059	684	-1448.4696	77.5992	6388832

2 rows