work/3579426058_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426058_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426058_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426058_sv1	27271606	43210	0.001584	21308555	0.218654	10627886	0.734034	0.263939	0.870959	0.129041	230	349	520	10229940	0.962556	8909862	1320078	15641196	5624149	379.849543	134.500122	5963051	0.975553	0.935305	0.935305	4084259400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	167505	0.10187	0.0	0.11856	0.139191	0.257961	0.34134	0.811452	1.150384	0.975803	0.908157	1.021912	1.05302	1.022731	1.141473	1.067415	0.873343	0.616302	0.315229	0.377552	0.0	0.0	0.0	221.245518	0.365111	1397.0	47.0	76.0	218.0	387.0	442.0	0.10701	0.999482	6359573	5685189	1.00	0.89299	6366463	0.003	637	-857.8275	20.9958	6388832

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