work/3579426060_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426060_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426060_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426060_sv1	27845606	43138	0.001549	21667231	0.22188	10807647	0.734008	0.264001	0.868295	0.131705	228	348	517	10424750	0.964572	9051754	1372996	15903912	5720181	377.675527	133.862991	6178375	0.976391	0.93745	0.93745	4170370200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	160019	0.168694	0.0	0.166414	0.216391	0.282196	0.361197	0.841097	1.183499	1.018217	0.911106	1.014368	1.016618	0.979692	1.097787	1.014667	0.853735	0.566684	0.28121	0.346506	0.0	0.0	0.0	224.90128	0.325713	1170.0	58.0	85.0	226.0	374.0	426.0	0.083444	0.999762	6345494	5835220	1.00	0.916556	6366463	0.005	716	-1163.7056	51.8654	6388832

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