work/3579426063_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426063_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426063_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426063_sv1	26920116	36650	0.001361	19567187	0.273139	9761487	0.713219	0.284908	0.878239	0.121761	260	393	578	9231896	0.945747	8107810	1124086	13955692	5574845	423.541598	146.076477	7352929	0.974378	0.930762	0.930762	4032519900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	151860	0.069101	0.0	0.090231	0.114744	0.288788	0.332978	0.799866	1.13063	0.968472	0.902124	1.03065	1.076822	1.05302	1.143401	1.048644	0.802419	0.575267	0.285215	0.381484	0.0	0.0	0.0	200.761669	0.382403	949.0	39.0	64.0	196.0	360.0	416.0	0.149608	0.999737	6349213	5413988	1.00	0.850392	6366463	0.0161	729	-2198.662	344.1662	6388832

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