work/3579426066_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426066_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426066_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426066_sv1	28648976	42151	0.001471	23444028	0.18168	11696605	0.748059	0.250143	0.876865	0.123135	224	336	500	11302046	0.966267	9910368	1391678	17537518	5864359	366.850587	129.132309	5204948	0.976619	0.938257	0.938257	4291023750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	174785	0.132056	0.0	0.142467	0.191361	0.270053	0.352775	0.834942	1.173443	1.008125	0.904767	1.014472	1.021273	0.987513	1.124078	1.04129	0.894405	0.606367	0.281647	0.355072	0.0	0.0	0.0	247.739639	0.323271	1518.0	66.0	95.0	249.0	412.0	470.0	0.058563	0.99941	6346611	5993621	1.00	0.941437	6366463	0.0086	658	-1527.1217	126.1386	6388832

2 rows