work/3579426069_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426069_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426069_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426069_sv1	25217670	33159	0.001315	19762241	0.216334	9861144	0.739989	0.258333	0.880808	0.119192	234	356	528	9487923	0.962152	8357036	1130887	14623837	5105245	385.570912	135.880127	5455429	0.976934	0.938177	0.938177	3777676650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	153320	0.095008	0.0	0.10929	0.135084	0.261633	0.345704	0.826097	1.16849	0.987462	0.911943	1.025799	1.046772	1.009225	1.111367	1.016317	0.814575	0.566906	0.278547	0.36016	0.0	0.0	0.0	207.679957	0.365872	1353.0	44.0	71.0	204.0	362.0	414.0	0.126703	0.999775	6357013	5559815	1.00	0.873297	6366463	0.0135	718	-2023.3456	254.0956	6388832

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