work/3579426072_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426072_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426072_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426072_sv1	25849180	32030	0.001239	20407104	0.210532	10184138	0.738744	0.259687	0.882749	0.117251	236	359	534	9773967	0.959725	8627960	1146007	15075624	5299450	389.38894	137.878876	5442076	0.976042	0.935642	0.935642	3872572500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	159091	0.075703	0.0	0.090724	0.112954	0.254369	0.331155	0.801061	1.147788	0.977348	0.907616	1.028347	1.063247	1.028828	1.137955	1.043318	0.826062	0.575816	0.286849	0.444608	0.0	0.0	0.0	213.842073	0.368534	1156.0	45.0	72.0	210.0	377.0	431.0	0.120354	0.999827	6356505	5600235	1.00	0.879646	6366463	0.0086	678	-1528.5961	120.6262	6388832

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