work/3579426073_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426073_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426073_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426073_sv1	34837366	51123	0.001467	26726515	0.23282	13333320	0.738202	0.259885	0.875869	0.124131	224	345	520	12806122	0.96046	11216488	1589634	19729572	6945820	377.333134	137.569595	8110851	0.975974	0.936398	0.936398	5217936450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	196712	0.176265	0.0	0.16997	0.201723	0.283678	0.365094	0.838621	1.167425	1.001124	0.901127	1.010026	1.030424	1.002994	1.129053	1.039581	0.868304	0.592819	0.276988	0.410087	0.0	0.0	0.0	277.228223	0.318657	1375.0	76.0	109.0	278.0	460.0	526.0	0.033616	0.998545	6346366	6152449	1.00	0.966384	6366463	0.008	721	-1914.8211	144.4422	6388832

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