work/3579426074_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426074_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426074_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426074_sv1	28277846	42204	0.001492	21697384	0.232707	10823200	0.732919	0.265136	0.869709	0.130291	227	347	519	10393531	0.960301	9039347	1354184	15902419	5752761	378.302012	135.704651	6580462	0.974906	0.933372	0.933372	4235346300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	170236	0.068945	0.0	0.097858	0.107951	0.257091	0.338775	0.816637	1.153791	0.977136	0.906412	1.023169	1.056577	1.023178	1.129752	1.058002	0.856698	0.608012	0.306441	0.351398	0.0	0.0	0.0	224.692123	0.364328	1152.0	49.0	78.0	221.0	393.0	449.0	0.102084	0.999491	6361135	5716549	1.00	0.897916	6366463	0.0129	634	-1720.1949	220.8434	6388832

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