work/3579426077_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426077_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426077_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426077_sv1	34719270	53834	0.001551	27649129	0.203637	13793147	0.746054	0.251998	0.874871	0.125129	224	337	500	13323024	0.965916	11655930	1667094	20627757	6967538	367.314624	128.749741	7070141	0.976913	0.938795	0.938795	5199815400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	217330	0.080394	0.0	0.101952	0.114562	0.246122	0.34261	0.824009	1.163598	0.982917	0.906449	1.017553	1.045062	1.011717	1.131574	1.058734	0.87363	0.60825	0.30669	0.402418	0.0	0.0	0.0	291.410486	0.360603	1323.0	64.0	102.0	288.0	506.0	575.0	0.046275	0.998727	6365095	6071857	1.00	0.953725	6366463	0.0118	664	-2174.4313	249.4713	6388832

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