work/3579426081_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426081_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426081_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426081_sv1	25816654	38588	0.001495	19882898	0.229842	9918163	0.74122	0.256839	0.877082	0.122918	225	344	516	9565944	0.964487	8390115	1175829	14737611	5106699	375.947891	135.253647	5933756	0.976716	0.938608	0.938608	3866709900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	155959	0.092772	0.0	0.099441	0.136196	0.253646	0.354757	0.824478	1.159012	0.981749	0.905011	1.023741	1.045575	1.017064	1.134403	1.042527	0.848562	0.583813	0.290875	0.383214	0.0	0.0	0.0	207.50166	0.361187	1799.0	46.0	73.0	204.0	363.0	417.0	0.121291	0.999736	6359316	5594266	1.00	0.878709	6366463	0.0179	706	-2349.8703	364.8358	6388832

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