work/3579426083_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426083_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426083_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426083_sv1	28973472	43157	0.00149	23770767	0.179568	11859525	0.745737	0.252447	0.875158	0.124842	233	341	500	11490078	0.968848	10055628	1434450	17726746	6000864	371.257739	125.032486	5202705	0.977028	0.939103	0.939103	4339547250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	186753	0.080526	0.0	0.089232	0.118027	0.234934	0.342005	0.817901	1.166264	0.983201	0.90878	1.018613	1.0416	1.006859	1.132849	1.059787	0.898386	0.615108	0.316352	0.385219	0.0	0.0	0.0	253.200571	0.36369	1125.0	54.0	87.0	250.0	442.0	499.0	0.07431	0.999577	6362727	5893372	1.00	0.92569	6366463	0.0108	723	-2132.2492	222.0937	6388832

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