work/3579426084_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426084_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426084_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426084_sv1	27416720	39605	0.001445	20617578	0.247993	10284772	0.72943	0.268649	0.878602	0.121398	247	364	535	9847409	0.957475	8651951	1195458	15039090	5538883	395.772621	134.294662	6799142	0.975197	0.933784	0.933784	4106567250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	150934	0.166373	0.0	0.152652	0.206702	0.30725	0.371326	0.85269	1.174872	1.007038	0.903948	1.010845	1.026192	0.990831	1.111072	1.032782	0.847776	0.576227	0.270183	0.375055	0.0	0.0	0.0	215.747565	0.329271	1099.0	56.0	81.0	217.0	362.0	415.0	0.097121	0.999639	6345388	5748144	1.00	0.902879	6366463	0.0025	584	-657.8295	12.7924	6388832

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