work/3579426086_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426086_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426086_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426086_sv1	34087534	51888	0.001522	25986014	0.237668	12962535	0.737244	0.260759	0.869718	0.130282	221	342	513	12490153	0.963558	10862906	1627247	19158030	6776096	372.641297	135.421906	8101520	0.976016	0.936422	0.936422	5105346900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	205311	0.096169	0.0	0.119863	0.123365	0.251332	0.343319	0.826129	1.166535	0.982518	0.904856	1.018019	1.042636	1.012801	1.132963	1.047152	0.871212	0.613628	0.303175	0.432993	0.0	0.0	0.0	269.144647	0.360196	1472.0	60.0	94.0	266.0	467.0	533.0	0.059342	0.999037	6365043	5988667	1.00	0.940658	6366463	0.0048	709	-1343.1522	63.0541	6388832

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