work/3579426087_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426087_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426087_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426087_sv1	27495626	39248	0.001427	21388670	0.222106	10670643	0.741009	0.257156	0.87799	0.12201	226	346	519	10282690	0.963643	9028098	1254592	15849191	5500231	378.143022	136.003113	6106956	0.976197	0.937082	0.937082	4118456700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	158780	0.166706	0.0	0.154189	0.210779	0.286677	0.36553	0.842135	1.175482	1.003969	0.90157	1.00785	1.022666	0.997962	1.123163	1.044272	0.875185	0.586351	0.28822	0.355033	0.0	0.0	0.0	223.248166	0.322919	1112.0	60.0	87.0	224.0	372.0	430.0	0.080246	0.999511	6345099	5855578	1.00	0.919754	6366463	0.0112	691	-1736.8798	175.1589	6388832

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