work/3579426089_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426089_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426089_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426089_sv1	29845042	45105	0.001511	23126885	0.225101	11536445	0.734468	0.263582	0.86964	0.13036	222	344	517	11068524	0.95944	9625627	1442897	16985955	6095825	375.078895	137.016678	6718157	0.975358	0.934667	0.934667	4469990550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	170733	0.150756	0.0	0.147067	0.190088	0.283535	0.347652	0.825723	1.163244	1.001677	0.904998	1.016677	1.037428	1.002513	1.119746	1.044093	0.866078	0.605608	0.288862	0.377418	0.0	0.0	0.0	238.519435	0.325189	1828.0	63.0	91.0	239.0	399.0	457.0	0.067932	0.999638	6346261	5933977	1.00	0.932068	6366463	0.0091	633	-1543.2574	139.6463	6388832

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