work/3579426090_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426090_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426090_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426090_sv1	32364392	43213	0.001335	25179422	0.222002	12564193	0.738483	0.259801	0.878928	0.121072	229	351	525	12042429	0.958472	10584429	1458000	18594577	6541632	382.049271	136.7332	7184970	0.976347	0.936541	0.936541	4848176850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	194794	0.090432	0.0	0.099137	0.128264	0.253606	0.336389	0.816499	1.153116	0.978486	0.905036	1.024023	1.059049	1.02339	1.135436	1.04215	0.838536	0.585419	0.285873	0.355925	0.0	0.0	0.0	263.055479	0.363564	1465.0	57.0	91.0	259.0	457.0	522.0	0.065429	0.998873	6362820	5949909	1.00	0.934571	6366463	0.0086	654	-1711.6881	143.9189	6388832

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