work/3579426092_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426092_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426092_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426092_sv1	30591344	48955	0.0016	24539134	0.197841	12240227	0.744237	0.253769	0.876088	0.123912	234	341	499	11806718	0.964583	10343725	1462993	18262919	6227260	371.151687	124.694618	6052210	0.976589	0.937846	0.937846	4581358350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	181138	0.205101	0.0	0.169056	0.217129	0.3014	0.383297	0.878372	1.198006	1.013253	0.904534	1.003815	1.008395	0.971308	1.092337	1.025045	0.870486	0.59324	0.279367	0.357404	0.0	0.0	0.0	261.449135	0.325552	1330.0	69.0	99.0	264.0	432.0	491.0	0.050836	0.999335	6346561	6042815	1.00	0.949164	6366463	0.0029	634	-935.8145	21.148	6388832

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