work/3579426098_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426098_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426098_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426098_sv1	31295214	37506	0.001198	24791643	0.207814	12373484	0.761718	0.236769	0.881099	0.118901	220	325	479	12055136	0.974272	10621763	1433373	18884246	5869891	355.303864	121.988777	6503571	0.979814	0.946462	0.946462	4688656200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	182490	0.143191	0.0	0.160394	0.197409	0.249082	0.363592	0.870567	1.215526	1.030673	0.910903	1.002356	0.989813	0.949307	1.083165	1.016172	0.879881	0.591139	0.280311	0.329896	0.0	0.0	0.0	267.169963	0.315548	1182.0	74.0	105.0	270.0	434.0	491.0	0.039473	0.998751	6346638	6115160	1.00	0.960527	6366463	0.0014	602	-701.3712	6.1886	6388832

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