work/3579426099_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426099_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426099_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426099_sv1	30583118	36248	0.001185	24011582	0.214875	11984210	0.753675	0.244816	0.884641	0.115359	223	342	511	11619318	0.969552	10278926	1340392	18096923	5878411	372.037709	133.596405	6571536	0.978098	0.941292	0.941292	4582030500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	188973	0.07261	0.0	0.094753	0.120739	0.22709	0.334501	0.816994	1.166993	0.989897	0.913275	1.025084	1.04048	1.004476	1.124269	1.03228	0.846887	0.572061	0.283966	0.366654	0.0	0.0	0.0	254.188609	0.36135	1430.0	56.0	89.0	250.0	442.0	504.0	0.070765	0.999212	6363951	5915942	1.00	0.929235	6366463	0.0116	700	-2151.1257	230.8565	6388832

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