work/3579426102_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426102_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426102_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426102_sv1	36068070	45646	0.001266	26288612	0.271139	13117548	0.724554	0.27371	0.878333	0.121667	244	378	565	12510609	0.953731	10988485	1522124	19047513	7195453	409.465043	148.135651	9779458	0.975699	0.934342	0.934342	5403363600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	193159	0.110885	0.0	0.131945	0.198364	0.295151	0.357176	0.835953	1.172781	1.00005	0.899238	1.012005	1.038966	1.005948	1.119357	1.029303	0.824805	0.571801	0.281818	0.376494	0.0	0.0	0.0	270.638232	0.335215	1041.0	67.0	98.0	272.0	457.0	522.0	0.052462	0.999328	6346816	6032464	1.00	0.947538	6366463	0.0096	663	-1689.636	161.6685	6388832

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