work/3579426109_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426109_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426109_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426109_sv1	29996860	38654	0.001289	23178312	0.227309	11566118	0.75036	0.247973	0.878302	0.121698	217	335	505	11223769	0.970401	9857854	1365915	17392074	5747584	366.028065	134.059784	6818548	0.977458	0.940542	0.940542	4493730900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	182106	0.077468	0.0	0.111491	0.116444	0.238171	0.350074	0.828218	1.17279	0.988186	0.910325	1.017405	1.033336	1.006511	1.127083	1.034364	0.860822	0.579845	0.292673	0.416652	0.0	0.0	0.0	242.187801	0.355391	1043.0	55.0	87.0	239.0	421.0	480.0	0.075054	0.999794	6362825	5888634	1.00	0.924946	6366463	0.0048	596	-1026.918	44.9135	6388832

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