work/3579426112_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426112_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426112_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426112_sv1	34231372	49243	0.001439	25922089	0.242739	12931815	0.721861	0.27624	0.873384	0.126616	253	371	544	12356742	0.95553	10792183	1564559	18712139	7160707	402.77454	135.343414	8309283	0.974632	0.931992	0.931992	5127319350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	189755	0.14164	0.0	0.137071	0.221562	0.297868	0.357646	0.840363	1.170596	1.004967	0.90429	1.013599	1.031532	0.99958	1.113768	1.025523	0.844121	0.582966	0.29059	0.380142	0.0	0.0	0.0	269.624986	0.332854	1343.0	68.0	98.0	272.0	450.0	513.0	0.052315	0.999012	6345470	6033403	1.00	0.947685	6366463	0.0112	653	-1952.0552	209.9982	6388832

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