work/3579426113_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426113_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426113_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426113_sv1	24578276	32999	0.001343	18781084	0.235867	9369897	0.712506	0.285737	0.870189	0.129811	243	379	567	8877392	0.947438	7725008	1152384	13381628	5366457	409.731968	148.223343	5797192	0.972788	0.927427	0.927427	3681791550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	137952	0.161447	0.0	0.163347	0.205133	0.313675	0.342976	0.794737	1.130977	0.987248	0.906021	1.029579	1.067901	1.035505	1.138351	1.032858	0.807679	0.566314	0.282555	0.359616	0.0	0.0	0.0	189.815032	0.336197	1617.0	47.0	69.0	189.0	323.0	371.0	0.139758	0.999796	6344653	5476701	1.00	0.860242	6366463	0.0136	637	-1579.616	202.8071	6388832

2 rows