work/3579426114_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426114_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426114_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426114_sv1	23712712	32701	0.001379	18022196	0.239977	8990696	0.703464	0.294722	0.868319	0.131681	247	396	589	8488578	0.944151	7370794	1117784	12677965	5311530	422.207242	154.097916	5690516	0.971339	0.923183	0.923183	3552001650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	139824	0.077727	0.0	0.102547	0.12179	0.293901	0.319945	0.765562	1.10173	0.960317	0.911445	1.043252	1.104813	1.070589	1.155051	1.036477	0.760746	0.546075	0.250629	0.360547	0.0	0.0	0.0	178.611813	0.377426	1503.0	36.0	58.0	174.0	321.0	370.0	0.188422	0.999957	6339884	5166883	1.00	0.811578	6366463	0.0151	674	-1722.2593	241.6824	6388832

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