work/3579426115_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426115_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426115_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426115_sv1	25423794	37843	0.001488	19465263	0.234368	9709324	0.710978	0.287078	0.872902	0.127098	255	382	562	9150800	0.942475	7987752	1163048	13839366	5588054	412.247457	141.040375	5958531	0.97266	0.927281	0.927281	3807892650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	150177	0.066904	0.0	0.100657	0.119249	0.294304	0.332232	0.792397	1.118576	0.964444	0.91066	1.037306	1.090961	1.055711	1.134449	1.040986	0.78593	0.581172	0.273297	0.392983	0.0	0.0	0.0	198.673163	0.3769	1397.0	40.0	65.0	194.0	354.0	406.0	0.149887	0.999844	6351657	5412215	1.00	0.850113	6366463	0.0065	679	-1160.5295	74.9229	6388832

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