work/3579426116_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426116_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426116_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426116_sv1	17395550	26096	0.0015	13676262	0.213807	6821020	0.742706	0.255386	0.871744	0.128256	222	337	506	6593659	0.966668	5747984	845675	10157443	3492723	369.655675	133.992386	3719288	0.971618	0.923826	0.923826	2605418100	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	101415	0.141201	0.0	0.140313	0.196192	0.281312	0.369112	0.849248	1.189263	1.012448	0.90859	1.006334	1.016497	0.98032	1.105494	1.020458	0.860013	0.592264	0.273522	0.451133	0.0	0.0	0.0	141.394658	0.327245	1116.0	36.0	54.0	141.0	236.0	274.0	0.261694	0.999977	6334955	4700401	1.00	0.738306	6366463	0.0109	552	-940.1015	93.9032	6388832

2 rows