work/3579426117_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426117_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426117_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426117_sv1	38115424	57673	0.001513	30171498	0.208418	15052090	0.741123	0.256966	0.87536	0.12464	229	344	510	14498160	0.963199	12691110	1807050	22360781	7753044	374.711132	131.539246	7943926	0.976555	0.937624	0.937624	5708662650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	223290	0.114512	0.0	0.135931	0.183016	0.273047	0.358604	0.848137	1.179713	1.004043	0.90056	1.010267	1.025512	0.989001	1.116699	1.042359	0.886523	0.602003	0.297401	0.332825	0.0	0.0	0.0	316.372302	0.321398	2173.0	85.0	122.0	320.0	522.0	592.0	0.020636	0.998488	6346347	6235085	1.00	0.979364	6366463	0.0063	706	-1716.7793	108.2151	6388832

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