work/3579426120_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426120_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426120_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426120_sv1	26065410	38379	0.001472	21185016	0.187236	10569000	0.74061	0.257578	0.872903	0.127097	222	339	506	10143406	0.959732	8854213	1289193	15689841	5456796	368.913004	131.631393	4880394	0.976408	0.937878	0.937878	3904054650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	164239	0.083508	0.0	0.104385	0.107734	0.249561	0.331825	0.804038	1.145089	0.974681	0.9086	1.025232	1.062368	1.028483	1.141865	1.054846	0.856032	0.605037	0.299776	0.341189	0.0	0.0	0.0	220.717945	0.363276	1166.0	48.0	77.0	217.0	386.0	440.0	0.106152	0.999809	6360465	5690649	1.00	0.893848	6366463	0.0129	632	-1863.8954	224.5868	6388832

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