work/3579426124_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579426124_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426124_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579426124_sv1	29290312	46228	0.001578	22748996	0.223327	11346785	0.737954	0.260014	0.875205	0.124795	241	353	515	10958194	0.965753	9590662	1367532	16787712	5915056	382.37508	127.905434	6541316	0.975627	0.935729	0.935729	4386612600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	178695	0.085426	0.0	0.11052	0.124689	0.251183	0.362073	0.842052	1.180326	0.990654	0.910512	1.013895	1.026799	0.99681	1.11631	1.041011	0.874943	0.598462	0.300822	0.395096	0.0	0.0	0.0	239.977807	0.365903	1403.0	51.0	82.0	236.0	418.0	478.0	0.088673	0.999346	6362253	5801927	1.00	0.911327	6366463	0.0121	631	-1867.1268	215.9049	6388832

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