work/3579449672_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579449672_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449672_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579449672_sv1	33453680	59858	0.001789	25456620	0.239049	12693097	0.732176	0.265472	0.87673	0.12327	246	359	524	12161691	0.958134	10662523	1499168	18638733	6758029	389.466068	129.815506	7997060	0.974352	0.932313	0.932313	5009073300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	186331	0.163143	0.0	0.148312	0.219758	0.29812	0.371854	0.869136	1.197027	1.01545	0.904949	1.002915	1.00692	0.974883	1.097795	1.025869	0.865227	0.592373	0.27398	0.36151	0.0	0.0	0.0	267.744647	0.327893	1197.0	70.0	100.0	271.0	442.0	506.0	0.048352	0.998959	6346207	6058631	1.00	0.951648	6366463	0.0068	712	-1582.5456	99.15	6388832

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