work/3579449677_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579449677_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449677_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579449677_sv1	29523540	51621	0.001748	22832848	0.226622	11385346	0.739546	0.258193	0.877353	0.122647	226	344	516	10903916	0.957715	9566584	1337332	16885942	5895285	375.731787	134.570404	6690692	0.973665	0.93089	0.93089	4420787850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	167087	0.158929	0.0	0.149983	0.194796	0.297621	0.367817	0.859657	1.18734	1.011125	0.904042	1.006634	1.018534	0.982261	1.100714	1.031923	0.862301	0.596834	0.275157	0.313649	0.0	0.0	0.0	238.585803	0.322401	1394.0	64.0	92.0	241.0	395.0	450.0	0.066259	0.999838	6345185	5944628	1.00	0.933741	6366463	0.004	601	-898.8653	32.2093	6388832

2 rows