work/3579449685_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579449685_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449685_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579449685_sv1	29044424	49526	0.001705	23145325	0.203106	11542697	0.72839	0.269471	0.863059	0.136941	231	345	512	11099048	0.961565	9579135	1519913	16858814	6236985	376.516787	131.594025	5899099	0.97396	0.931752	0.931752	4349234700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	170134	0.164453	0.0	0.13495	0.193998	0.281536	0.35833	0.842376	1.178916	1.010461	0.90767	1.015404	1.020938	0.983781	1.106977	1.030766	0.869846	0.59522	0.293158	0.382448	0.0	0.0	0.0	239.410795	0.324398	1507.0	63.0	92.0	241.0	397.0	454.0	0.067256	0.999588	6346130	5938277	1.00	0.932744	6366463	0.0161	645	-2137.8764	317.0938	6388832

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