work/3579449686_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579449686_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449686_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579449686_sv1	29469680	52697	0.001788	23697414	0.195871	11817095	0.734394	0.263383	0.866499	0.133501	223	339	508	11366706	0.961887	9849244	1517462	17403231	6241486	370.412682	133.187744	5772266	0.974671	0.934146	0.934146	4412547450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	176779	0.137572	0.0	0.12526	0.188755	0.272759	0.356301	0.83319	1.165545	1.011871	0.910521	1.018266	1.028172	0.991007	1.105806	1.031854	0.87204	0.592294	0.269944	0.359722	0.0	0.0	0.0	245.305985	0.320711	1551.0	66.0	95.0	247.0	406.0	461.0	0.058549	0.999919	6346736	5993713	1.00	0.941451	6366463	0.0133	646	-1956.343	233.4017	6388832

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