work/3579449687_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579449687_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449687_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579449687_sv1	29831100	50650	0.001698	24291026	0.185715	12115015	0.738727	0.259188	0.869086	0.130914	224	340	508	11715227	0.967001	10181541	1533686	17944430	6295946	371.162077	132.442413	5540074	0.974854	0.934335	0.934335	4467067500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	180121	0.166031	0.0	0.157571	0.215897	0.282822	0.366086	0.846842	1.185922	1.015279	0.911579	1.014902	1.013611	0.970086	1.101233	1.024932	0.883594	0.596299	0.287343	0.342637	0.0	0.0	0.0	252.939365	0.320797	1206.0	68.0	98.0	255.0	417.0	473.0	0.052665	0.999032	6344758	6031173	1.00	0.947335	6366463	0.0064	683	-1426.5525	77.1435	6388832

2 rows