work/3579449688_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579449688_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449688_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579449688_sv1	35919760	61599	0.001715	28257929	0.213304	14092614	0.725319	0.272501	0.865157	0.134843	240	354	521	13543618	0.961044	11717354	1826264	20496016	7700314	385.787915	131.408447	7661831	0.97435	0.932587	0.932587	5378724150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	221114	0.066418	0.0	0.099627	0.115492	0.252824	0.347668	0.823664	1.158653	0.976969	0.907409	1.022894	1.046937	1.017094	1.132604	1.056039	0.876759	0.6131	0.292888	0.354812	0.0	0.0	0.0	292.985235	0.366222	1575.0	63.0	100.0	289.0	510.0	580.0	0.048486	0.998448	6365565	6057776	1.00	0.951514	6366463	0.0142	711	-2818.8165	395.7252	6388832

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