work/3579450850_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579450850_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450850_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579450850_sv1	37614290	44122	0.001173	28825476	0.233656	14387170	0.771079	0.22739	0.871219	0.128781	198	296	443	14082779	0.978843	12269178	1813601	22226730	6554624	328.061643	117.629929	8788814	0.981122	0.950788	0.950788	5635525200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	231681	0.068145	0.0	0.103681	0.11037	0.207274	0.340406	0.823195	1.169391	0.981002	0.897753	1.007244	1.017378	1.00178	1.165694	1.123815	1.02809	0.697846	0.362047	0.421413	0.0	0.0	0.0	307.477743	0.355325	1487.0	70.0	111.0	304.0	536.0	616.0	0.035956	0.998244	6365185	6137548	1.00	0.964044	6366463	0.0183	723	-3594.0964	640.1738	6388832

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